PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485380
Common NameARALYDRAFT_485380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 154aa    MW: 17049.5 Da    PI: 10.331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485380genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-182169355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +kG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  485380 21 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69
            8*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-362083IPR001471AP2/ERF domain
PROSITE profilePS5103222.4842077IPR001471AP2/ERF domain
PRINTSPR003672.1E-82132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292178IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-212178IPR016177DNA-binding domain
CDDcd000182.56E-272179No hitNo description
PfamPF008471.1E-112169IPR001471AP2/ERF domain
PRINTSPR003672.1E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDAGVAVKVD VVGARKRERP FKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY  60
DTAVFYLRGP TATLNFPELL PCTSTEDMSA ATIRKKATEV GAQVDAIGTT VVQNNKRRRV  120
FSQKRDFGGG LLELVDLNKL PDPENLDDDL VGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-151977463ATERF1
2gcc_A4e-151977463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329760.0AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBankAY0455790.0AY045579.1 Arabidopsis thaliana AT3g50260/F11C1_100 mRNA, complete cds.
GenBankAY0937920.0AY093792.1 Arabidopsis thaliana AT3g50260/F11C1_100 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876019.11e-109ATERF#011/CEJ1
SwissprotQ9SNE11e-105ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLD7LT401e-109D7LT40_ARALL; ATERF#011/CEJ1
STRINGfgenesh2_kg.5__1372__AT3G50260.11e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.15e-99cooperatively regulated by ethylene and jasmonate 1